Lots of great replies so far. One thing to point out is that the whole concept of, " It's clogging because it's a low flow toilet" is definitely valid, assuming it's still 1985. Toilets have come a long way since low water use mandates were first enacted. A bit of research should make it clear that there are lots of choices in inexpensive, yet very effective, new toilets available.
After looking at the tank and being positive that a full flow of water is being supplied during the flush cycle, my next step in this situation would be to pull the toilet and have a good look at what's going on. Issues can include a failed wax seal. If the seal is broken it can be sucking air. and not functioning properly, without leaving obvious signs of leakage. I would look at the throat of the opening at the base of the bowl, and see if it, or the internal passageway are caked with mineral scale. Now run a short snake down the pipe and feel for obstructions. Next dump a five gallon bucket of water into the drain pipe. Does it accept water as fast as you can pour? Is there any gurgling, burping or sign that the water isn't flowing well.
If there is nothing obvious, I would head to Home Depot and grab a good toilet. They definitely wear out, and I have wasted a lot of time on repairing and tweaking one, only to find that an hour of work, and $100 for a new toilet lead to years of trouble free service.